DreEX6070639 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38658300-38660072:+
Coord C1 exon
chr12:38658300-38658475
Coord A exon
chr12:38659722-38659841
Coord C2 exon
chr12:38659934-38660072
Length
120 bp
Sequences
Splice sites
3' ss Seq
AAAATATCTCTCTTTTTAAGGTA
3' ss Score
10.47
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCACAGCCACCATCTATGGCTCTCCAGTGGCAGAGATCGCAGAGGGGGCTGAGATGAAGCAGCTGGTTGGTATTTGCCCCCAGTTCAACATAATCTTTGATGTGCTCACCGTAGAGGAACACCTGAGGATCTTTGCCGCCATCAAAGGGATCCTGCCCTCTGATATTGACGGTGAG
Seq A exon
GTAAGGAAAGTTCTAAAGGATCTGGATTTGGAAAAGATTATGGATGCTCTGGCAAAAAACCTCAGTGGAGGCCAGAAGAGGAAGCTCTCTGTGGGCATAGCCATTCTTGGAGATCCCAAG
Seq C2 exon
ATCCTCCTTTTGGATGAGCCTACAGCTGGTATGGACCCAGTGTCTCGGCACCAGGTTTGGTCTTTACTGAAGAGCCGTAGAGCAGGCAGAGTTACAGTTCTCAGCACTCACTATATGGATGAGGCTGATATACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'16-19,'16-17,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(39.5=100)
A:
PF0000522=ABC_tran=FE(26.5=100)
C2:
PF0000522=ABC_tran=PD(5.4=17.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTCCAGTGGCAGAGATC
R:
CCTGCTCTACGGCTCTTCAGT
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]