GgaEX6016380 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7980713-7981635:-
Coord C1 exon
chr18:7981460-7981635
Coord A exon
chr18:7981102-7981221
Coord C2 exon
chr18:7980713-7980851
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCCTGTGTGCAAAGGTG
3' ss Score
7.46
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGTTTGTCTCTGTCTATGGGCACAGAGTCTCCGAAATCGACGAGATGCTCGAAGTGCGGCGCATCGCAGGCGTGTGCCCACAGTCCGACATCCACTTCGATATATTGACGGTGGAGGAGAACCTCTCCCTCTTCGCTGCCATTAAAGGAATACCTCAGAATGACTTGATACAGGAG
Seq A exon
GTGCAGAAGGTGTTGCTGGATTTGGATATGCAGCCCATCCGAGATAACCAAGCCAAGAAGCTCAGCGGGGGACAGAAGCGACGGCTGTCAGTTGGCATTGCTGTTCTTGGGAACCCAAAG
Seq C2 exon
GTTTTGCTGCTGGATGAGCCGACAGCAGGCATGGATCCGTGCTCACGGCACATTGTCTGGAACCTGCTGAAGAACAGGAAGGCGAATTGCGTGACGGTCTTCAGCACTCACTTCATGGACGAGGCAGACATCCTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(39.5=100)
A:
PF0000522=ABC_tran=FE(26.5=100)
C2:
PF0000522=ABC_tran=PD(5.4=17.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGGCACAGAGTCTCCGA
R:
TTCGCCTTCCTGTTCTTCAGC
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]