MmuEX0003817 @ mm10
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26983848-26985549:+
Coord C1 exon
chr2:26983848-26983999
Coord A exon
chr2:26984100-26984163
Coord C2 exon
chr2:26985423-26985549
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTGGGCACTTCCAGGCC
3' ss Score
6.6
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGGTGCTCCAAGGCTCGCTGTCGCTCCCTAGCTGAGCTGGCTCCTGTGGCTGCAGTACATGGACACTGGTCTAGCTGGGGCCCCCATAGTCCCTGCTCCCGATCCTGTGGAGGAGGTGTGATTACCAGGAGGCGGTGGTGCAACAACCCCAG
Seq A exon
GCCTGCATTTGGGGGACGTGCATGTGTGGGTGAAGACCTCCAGGCTAAGATGTGCAACACGCAG
Seq C2 exon
GCTTGTGAGAAGACTCAGCTGGAGTTCATGTCCGAGCAGTGTGCCCAGACAGACAGACAACCACTGCAACTTTCCCAAGGCACTGCCTCCTTCTACCACTGGGATGCTGCTGTGCAGTATAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-'10-13,'10-11,11-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(52.9=52.9)
A:
PF0009014=TSP_1=FE(41.2=100)
C2:
PF0009014=TSP_1=PD(2.0=2.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGTGGCTGCAGTACATG
R:
TCGGACATGAACTCCAGCTGA
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types