RnoEX6016055 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5538058-5540729:+
Coord C1 exon
chr3:5538058-5538209
Coord A exon
chr3:5538311-5538374
Coord C2 exon
chr3:5540603-5540729
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTGGGCATTTCCAGGCC
3' ss Score
7.04
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGGTGCTCTAAGGCTCGCTGTCGCTCCCTAGCTGAGCTGGCTCCTGTGGCTGTGGTACATGGACACTGGTCTAGCTGGGGCCCCCACAGTCCTTGCTCTCGATCCTGTGGAGGAGGTGTGATCACCAGGAGACGGTGGTGCAACAACCCCAG
Seq A exon
GCCTGCATTTGGGGGACGTGCATGTGTGGGCGAGGACCTCCAGGCTAAGATGTGCAACACGCAG
Seq C2 exon
GCTTGTGAGAAGACTCAGCTGGAGTTCATGTCAGAGCAGTGTGCCCAGACAGACAGACATCCACTGCAACTTTCCCAAGGCAGTGCCTCCTTCTACCACTGGGATGCTGCTGTGCAGTATAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(52.9=52.9)
A:
PF0009014=TSP_1=FE(41.2=100)
C2:
PF0009014=TSP_1=PD(2.0=2.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACACTGGTCTAGCTGGG
R:
GGCACACTGCTCTGACATGAA
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]