MmuEX0007498 @ mm9
Exon Skipping
Gene
ENSMUSG00000045942 | BC049762
Description
cDNA sequence BC049762 [Source:MGI Symbol;Acc:MGI:3039622]
Coordinates
chr11:51067861-51076235:-
Coord C1 exon
chr11:51076135-51076235
Coord A exon
chr11:51068661-51068748
Coord C2 exon
chr11:51067861-51068166
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCATTATTCATTCTGAACAGACA
3' ss Score
7.38
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
GGCAGCTCAGTGACCAGGATATGGCTGTCACCTGGCGCTTCCGCTCTAAACTGGATTTGGAGAAGTTTACCTGAATATGCCTCTAAAAACAAGCGTAGCAG
Seq A exon
ACAGAAGCAAACCAAGGTGAAAGCTTGAGAAACACTGAAGGATCCAATGTGGGATGGAGTGGGAAGCAGGGAGGACAAAGGCCCTCAG
Seq C2 exon
GTTCTACCGGAAGCTCATGGACTGACTCTGAGATCAGGGTCTTCCTGCTGGAGTGGGAAGTAGTTGAACAGGAAATGGGCCACCCGGGCAGGAAGATCCACAAGAAGACCAGGGCTCTTTGCAGGCGCCTTTACCAGCAGGGCCTGAAGAAGAGCTGGGAAAGCTGTTTCGACCTACTGCTGAGCCTGCGAGATCTGCACAGGACTCTCTGTAATGAAAGACCAGGGATTGAACCCTTGTTTTCTCCTTATGCTGAGGCCCTGTACAGGATCCTGGGCTCCAGTCCCCAGGGAAGCCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045942-'2-2,'2-1,3-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCCGCTCTAAACTGGAT
R:
AGCCCTGGTCTTCTTGTGGAT
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types