MmuEX0008197 @ mm9
Exon Skipping
Gene
ENSMUSG00000024335 | Brd2
Description
bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]
Coordinates
chr17:34251835-34252751:-
Coord C1 exon
chr17:34252613-34252751
Coord A exon
chr17:34252307-34252521
Coord C2 exon
chr17:34251835-34252209
Length
215 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTTACTGTTTTGTAGCAC
3' ss Score
7.77
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
CCCACCGATGATATTGTCCTAATGGCACAGACACTGGAAAAGATCTTCCTACAGAAAGTAGCATCCATGCCACAAGAGGAGCAAGAGCTTGTGGTGACCATCCCTAAAAACAGCCATAAGAAGGGGGCCAAGTTAGCAG
Seq A exon
CACTCCAGGGCAGTATTACCAGTGCCCATCAGGTGCCTGCTGTCTCTTCTGTGTCGCATACAGCCCTGTATACACCACCACCTGAAATACCTACCACTGTCCTCAACATTCCCCACCCATCAGTCATCTCTTCTCCTCTTCTTAAGTCCCTGCATTCTGCTGGACCCCCACTCCTTGCTGTATCAGCAGCGCCTCCAGCTCAGCCCCTTGCCAAG
Seq C2 exon
AAAAAAGGCGTTAAACGGAAAGCGGATACTACCACCCCTACACCCACAGCCATCCTGGCTCCTGGTTCCCCAGCTAGTCCTCCTGGGAGTCTTGAGCCAAAGGCAGCAAGGCTCCCTCCTATGCGCAGAGAGAGTGGCCGCCCAATCAAACCCCCACGAAAAGACTTGCCTGACTCGCAACAGCAACACCAGAGCTCTAAGAAAGGGAAGCTGTCAGAGCAGTTAAAGCACTGCAACGGCATCCTGAAGGAACTGCTCTCAAAGAAGCACGCTGCCTACGCCTGGCCCTTCTATAAGCCAGTGGACGCTTCTGCTCTTGGCCTTCATGATTACCATGACATCATTAAACACCCCATGGACCTCAGCACTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024335-'10-14,'10-11,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.210 A=0.500 C2=0.645
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(11.8=21.3)
A:
NO
C2:
PF0043920=Bromodomain=PU(67.4=96.7),PF062846=Cytomega_UL84=PU(24.3=93.3),PF103374=DUF2422=PU(21.8=90.0),PF060886=TLP-20=PU(10.6=36.7),PF0105613=Myc_N=PU(0.1=0.0),PF062137=CobT=PU(0.1=0.0),PF056426=Sporozoite_P67=PU(17.7=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGCTTGTGGTGACCAT
R:
TGCCGTTGCAGTGCTTTAACT
Band lengths:
300-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types