GgaEX1011184 @ galGal4
Exon Skipping
Gene
ENSGALG00000000156 | BRD2
Description
bromodomain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001025845]
Coordinates
chr16:91047-93165:+
Coord C1 exon
chr16:91047-91188
Coord A exon
chr16:91270-91478
Coord C2 exon
chr16:92855-93165
Length
209 bp
Sequences
Splice sites
3' ss Seq
GGGGTTCTGCCTGTCCGCAGCGC
3' ss Score
9.76
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
CCCACAGATGACATTGTGCTGATGGCCCAAACCCTGGAGAAGATCTTCCTGCAGAAGGTGGCCCAAATGCCACCAGAAGAGCAGGAGATCGTGGTCCCAGTGGCCAAAAACAGCCACAAGAAGGGAGCGTCGCGGGCAGCAG
Seq A exon
CGCTCCTGGCAGGCCTCACAGCGGCTCAGCAAGTGCCAGCTGTCTCCTCTGTGTCCCACACTGCTGTGTACACCCCAAGCCCCGACATCGCCACCACCATAGTCAACATTCCCCACCCGTCCGTCATCTCCGCTCCGCTCCTCAAGTCGCTGCACTCCACTGCCCCGGCTGTGCTGACTGCGCCTGCGCCCACCCAACCCGTGGCCAAG
Seq C2 exon
GAACTCAAAGAAAGCAGCAAAAGCGGCGCTGCCGCCTCCGCCCGCGCTCTACGATTCGGAAGAGGAAGAGGAGAGCAAACCGATGACGTACGATGAGAAGAGGCAGTTGAGCCTGGACATCAACAAACTGCCCGGGGAGAAGCTGGGCCGTGTGGTGCACATCATCCAGTCCCGGGAGCCCTCACTGCGTGATTCCAACCCCGAGGAGATTGAGATCGACTTCGAGACCCTCAAACCCTCCACACTGCGTGAGCTGGAGCGCTACGTGCTGTCCTGCCTGCGGAAGAAACCCCGCAAACCCTATAGCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156_MULTIEX2-2/6=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.318 C2=0.867
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(11.8=20.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCCACCAGAAGAGCAGG
R:
CGATCTCAATCTCCTCGGGGT
Band lengths:
296-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]