BtaEX0005728 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7242565-7244365:+
Coord C1 exon
chr23:7242565-7242702
Coord A exon
chr23:7243683-7243897
Coord C2 exon
chr23:7243991-7244365
Length
215 bp
Sequences
Splice sites
3' ss Seq
ACTCTTTTTCTGCCCTCCAGCGC
3' ss Score
9.61
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
GATTATCACAAAATTATAAAGCAGCCTATGGATATGGGTACTATCAAGAGGAGACTTGAAAACAACTACTATTGGGCTGCCTCAGAGTGTATGCAGGATTTCAACACCATGTTCACCAACTGCTACATCTACAACAAG
Seq A exon
CGCTCCAGGGTAGTATCACCAGTGCCCACCAGGTGCCTGCCGTCTCTTCTGTGTCTCACACTGCCCTGTATACGCCACCACCTGAGATACCTACCACTGTCCTCAACATTCCCCACCCGTCGGTCATCTCTTCTCCCCTTCTCAAGTCCTTGCACTCCGCTGGACCCCCACTCCTTGCTGTCTCTGCAGCTCCCCCAGCACAGCCCCTTGCCAAG
Seq C2 exon
AAAAAGGGGGTAAAGCGGAAAGCAGATACTACCACCCCTACACCTACAGCTATCCTGGCTCCTGGGTCCCCAGCTAGCCCTCCAGGGGGTCTGGAGCCTAAGGCAGCACGGCTCCCCCCTGTGCGTAGAGAAAGTGGCCGCCCTATCAAGCCCCCACGCAAAGACTTGCCTGACTCTCAGCAACAACACCAGAGCTCCAAGAAAGGAAAGCTGTCGGAACAGTTAAAACATTGCAATGGCATTTTGAAGGAATTACTGTCTAAGAAGCATGCTGCCTATGCCTGGCCTTTCTATAAACCAGTGGACGCTTCTGCTCTTGGCCTGCATGACTACCATGACATCATTAAGCACCCCATGGACCTCAGCACTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074_MULTIEX2-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.500 C2=0.648
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(52.9=100)
A:
NO
C2:
PF090735=BUD22=PU(20.1=52.0),PF0043920=Bromodomain=PU(52.8=37.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATTGGGCTGCCTCAGAGT
R:
TGTTCCGACAGCTTTCCTTTCT
Band lengths:
292-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development