DreEX6042924 @ danRer10
Exon Skipping
Gene
ENSDARG00000046087 | brd2b
Description
bromodomain containing 2b [Source:ZFIN;Acc:ZDB-GENE-070220-1]
Coordinates
chr16:48781981-48787949:+
Coord C1 exon
chr16:48781981-48782128
Coord A exon
chr16:48782638-48782810
Coord C2 exon
chr16:48787494-48787949
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGGTGCTTTGTTTCCATTAGGAG
3' ss Score
7.62
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
CCTGCAGATGACATTGTGTTGATGGCACAGTCTCTGGAAAAGGTGTTCTTACAGAAGGTCGCCCAAATGCCTCAGGACGAGATCGAGTTGCCCTCTCCTACGCCGAGAGGAAGAGGAAATAAAAGCGTCAAAGCACGGAAAAGCAGAG
Seq A exon
GAGGCAGTGTAACATCGGCTCACCAGGTTCCAGCCGTGTCTCAGTCAGCCTACTCTCCTTCCTCACCTGAAACACCAGATTCGCAGTTCTCCACCCCTCCACAGACCCTGCTGAGCAGCAGCGGCCCTCCTCCATCTCTGATCACCCCACCACACACTCAACCCACAGCAAAG
Seq C2 exon
AAGAAGGGTGTAAAGCGTAAAGCCGACACCACCACTCCCACTACACTCGGCTTCCCAGTGACTCCGGCTCCTCGAATGGGAGGCCTAGGTAAGGGCCACGGTTCGGGTGGAGAGATGCCCCACTCTCTGTCCTCCATGCCTCTGGACTGCTCTCCCAGCATGGGTGTGAATGAGTCTGTCCACCTCCAGCCTGTACTGGGGGGTCGCCCGCTGTCTCGACGTCCCATCAAACCTCCACGTAAAGATCTGCCGGACTCCGTGCGGCCGCATCAGCCCTCCCGAAGAGGAAAACTGAGCAAACAGCTTCGCTACTGCAGTGGCGTCCTGAAGGAGCTGCTGTCCAAAAAACACGTGGCTTATGCCTGGCCCTTCTACAAGCCTGTAGATGCATCAGCGCTGGGTCTCCACGACTACCACGACATCATCAAACACCCCATGGACCTCAGCACTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000046087-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=0.974 C2=0.664
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(11.8=20.0)
A:
NO
C2:
PF0043920=Bromodomain=PU(52.8=30.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAAGGTCGCCCAAATGC
R:
CAGAGGCATGGAGGACAGAGA
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]