MmuEX0008207 @ mm10
Exon Skipping
Gene
ENSMUSG00000024002 | Brd4
Description
bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
Coordinates
chr17:32229417-32284722:-
Coord C1 exon
chr17:32284518-32284722
Coord A exon
chr17:32253041-32253200
Coord C2 exon
chr17:32229417-32229735
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTATTCTCCTTGTTTTCTAGCCA
3' ss Score
8.48
5' ss Seq
GTAGTGAGT
5' ss Score
5.8
Exon sequences
Seq C1 exon
AGTGCGCTGGCGGCGGCGGCAGGGCTGTTTGTTCTGCTCTCCCGCAGCCGAGGAACCGAAGCAGTGGCGGCGGCTGCGGCGGAGGCTGCCAGCAGTGCCCGCGGGCGAGCGGGGCCTGTGAGCGCAGCGGCGCGGCGGGCGCGGCGGACGGGCCCCGGCTTGGCGTCCCGGACAGCGTGCGGCGGCGTGCGGCCTAGCGTCTCAG
Seq A exon
CCAACAAGATAGCTGTGTTCCAGTTTTGTTCAAAACTACTAGTGAAGAAGTCCTCCTCTCCTCTCATTCCCATATCTGCTTTCCGTCTGGACACAACATTGGGTCTAAGAAAATCAGCTCACCAGGCTGTGACCACTGAATCACATTGGAGTTCTCTGTA
Seq C2 exon
AGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTACGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACCTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGAGACCTCCAACCCTAACAAGCCCAAGAGACAGACAAACCAACTGCAATATCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACACCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024002_MULTIEX2-2/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.632
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(32.6=29.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCTGTTTGTTCTGCTCT
R:
TCTCAATCTTGTCCCAGGGCC
Band lengths:
256-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types