MmuEX0008213 @ mm10
Exon Skipping
Gene
ENSMUSG00000024002 | Brd4
Description
bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
Coordinates
chr17:32229417-32284722:-
Coord C1 exon
chr17:32284518-32284722
Coord A exon
chr17:32242246-32242438
Coord C2 exon
chr17:32229417-32229735
Length
193 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTGCTCCTCGATAAGGAA
3' ss Score
4.06
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AGTGCGCTGGCGGCGGCGGCAGGGCTGTTTGTTCTGCTCTCCCGCAGCCGAGGAACCGAAGCAGTGGCGGCGGCTGCGGCGGAGGCTGCCAGCAGTGCCCGCGGGCGAGCGGGGCCTGTGAGCGCAGCGGCGCGGCGGGCGCGGCGGACGGGCCCCGGCTTGGCGTCCCGGACAGCGTGCGGCGGCGTGCGGCCTAGCGTCTCAG
Seq A exon
GAAGGCCCACTTGATCCCGTCACAGACAGACAAGCTTGCCACACATGGACCCACCATAGGCCCTGCTGACGTGCTTCTTGGTCTTAGACAGTCTCAGAAGGACATCGGGCCTCACAGCACGAACCCCTCGCAGTCTGCCTGGGCGCAGGCCACATGCGGATTTAGGTGCTTTCCCAACCTTCTTGGTATAAAG
Seq C2 exon
AGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTACGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACCTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGAGACCTCCAACCCTAACAAGCCCAAGAGACAGACAAACCAACTGCAATATCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACACCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024002_MULTIEX2-3/3=C1-C2
Average complexity
ME(1-3[95=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.632
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(32.6=29.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCTGTTTGTTCTGCTCT
R:
TCTCAATCTTGTCCCAGGGCC
Band lengths:
256-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types