MmuEX1005256 @ mm10
Exon Skipping
Gene
ENSMUSG00000024002 | Brd4
Description
bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
Coordinates
chr17:32266420-32273936:-
Coord C1 exon
chr17:32273836-32273936
Coord A exon
chr17:32272230-32272373
Coord C2 exon
chr17:32266420-32266520
Length
144 bp
Sequences
Splice sites
3' ss Seq
AACATGTATTGTTCTTCCAGAGG
3' ss Score
7.04
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCTCTCAGTTTGGCTGGAATTAACCCCCAGGAAATAAGGATGAGAAGCTTATTACTACACTGTCAAGGGGTTAAGGAAGTCTTTGTTGAGAAGGCAGATAG
Seq A exon
AGGACCTGGTTTCACTTATTCATGTTTTTGAGTGGCCAAGTGGTGGTCACTCACAAATGATCTGTAACTCCAGTTCCAGAGGATCTGACAACCTTTTCTGAATTCCTTGGGCAGCAGACTTGCATATGGTGCACAAACATACAT
Seq C2 exon
GATCAAAGACGTGTGCCTCCATAGGTTGCCACCTGCCTGCCTGCTTTCTGAACACAGGCTAAAAAACTCTTTAATGTAGAAGCCAACTGATAGCTACAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024002-'3-6,'3-5,4-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAGTTTGGCTGGAATT
R:
AATTGTAGCTATCAGTTGGCTTCT
Band lengths:
202-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types