MmuEX0008215 @ mm9
Exon Skipping
Gene
ENSMUSG00000024002 | Brd4
Description
bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
Coordinates
chr17:32361032-32362658:-
Coord C1 exon
chr17:32362521-32362658
Coord A exon
chr17:32361804-32361931
Coord C2 exon
chr17:32361032-32361167
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCAGATCATTTGTTTACAGTTC
3' ss Score
3.5
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATTACTATAAGATTATTAAAACACCCATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGGAATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTATAACAAG
Seq A exon
TTCAGACCACAGATGTGATTAAAACCAACCCTTTCAAATAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCTCTGCTCGTGTAGTGGGTAAAATTGCCCAGAAGAGATGGGTAG
Seq C2 exon
CCTGGAGATGACATCGTCTTAATGGCAGAAGCTCTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTGCCTACAGAAGAAACTGAGATCATGATAGTCCAGGCAAAAGGAAGAGGACGAGGGAGGAAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024002_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.414
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(52.3=100)
A:
PF0043920=Bromodomain=PD(5.0=66.7)
C2:
PF0043920=Bromodomain=PD(11.6=21.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACAATAAAGAAGCGCTTGG
R:
TGTTTCTTTCCTCCCTCGTCCT
Band lengths:
238-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types