RnoEX0015133 @ rn6
Exon Skipping
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14250995-14252627:-
Coord C1 exon
chr7:14252490-14252627
Coord A exon
chr7:14251779-14251906
Coord C2 exon
chr7:14250995-14251130
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCAGATCATTTGTTTACAGTTC
3' ss Score
3.5
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATTACTATAAGATTATTAAAACACCCATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGGAATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTATAACAAG
Seq A exon
TTCAGACCACAGATGTGATTAAAACCAACCCTTTCAAATAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCTCTGCTCGTGTAGTGGGTAAAATTGCCCAGAAGAGATGGGTAG
Seq C2 exon
CCTGGAGATGACATCGTCTTAATGGCAGAAGCTCTGGAGAAGCTCTTCTTGCAGAAAATCAATGAACTGCCTACAGAAGAAACCGAGATCATGATAGTCCAGGCAAAGGGACGAGGACGAGGGAGGAAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.413
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(52.3=100)
A:
PF0043920=Bromodomain=PD(5.0=66.7)
C2:
PF0043920=Bromodomain=PD(11.6=21.7)
Main Inclusion Isoform:
ENSRNOT00000091368fB2076


Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACAATAAAGAAGCGCTTGG
R:
TTCTTTCCTCCCTCGTCCTCG
Band lengths:
235-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]