MmuEX0008600 @ mm9
Exon Skipping
Gene
ENSMUSG00000026405 | C4bp
Description
complement component 4 binding protein [Source:MGI Symbol;Acc:MGI:88229]
Coordinates
chr1:132531350-132535810:-
Coord C1 exon
chr1:132535646-132535810
Coord A exon
chr1:132533278-132533453
Coord C2 exon
chr1:132531350-132532947
Length
176 bp
Sequences
Splice sites
3' ss Seq
AAAACTTGTTTTCACTGTAGCTC
3' ss Score
6.52
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACTGTGATTTACCGCCTGCCATTGTCAATGGATATTATACTAGTATGGTCTACTCTAAGATAACTCTGGTTACATATGAATGTGATAAAGGATACAGACTGGTTGGAAAGGCAATCATCTCCTGCAGCTTTTCAAAGTGGAAAGGGACAGCTCCACAGTGTAAAG
Seq A exon
CTCTATGTCAGAAACCAGAGGTAGGAAATGGAACGCTGTCTGATGAGAAAGATCAGTATGTTGAGTCTGAAAATGTCACCATCCAATGTGACTCTGGCTTTGCCATGCTGGGTTCCCAAAGCATCAGTTGTTCAGAGAGTGGAACCTGGTATCCAGAGGTGCCCAGATGTGAGCAG
Seq C2 exon
GAGGCCTCTGAAGACCTTAAGCCTGCGCTTACAGGCAACAAGACCATGCAGTATGTGCCAAATTCACACGATGTGAAAATGGCTCTGGAGATCTACAAGCTGACTCTGGAGGTTGAACTACTACAGCTCCAGATACAAAAGGAGAAACACACTGAAGCACACTGACCGGGAGTTATGACTGTATGTTCTCTTAAGGAGGAAGTAGCGTCTCATTGGCTTTCTGACTTCAGTTCCAAACAGATTGCCTGCAGTTACCAACCTTTGTAATGCTGGCACCAATGTTCATGATAATAAATATCTGCTTAGAATAATTCATTAATTATGTTATAATTAATAGGTAGTAAATCTATGAAACTATCATCTTGTGGCTCATAAATTTGCTTTTCTGAATGCAATGTGTACATTTTGAATGTGTGAATTAAAAGTCAATTTTGCTCTTGTCATCCACTTACTTCTATATACAATTAATAATACATTTATTTAAAAATCTGAGGTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026405_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.204
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(0.1=0.0),PF0008415=Sushi=WD(100=96.4)
A:
PF0008415=Sushi=WD(100=93.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTGGTTGGAAAGGCAA
R:
CATAACTCCCGGTCAGTGTGC
Band lengths:
249-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: