RnoEX0015712 @ rn6
Exon Skipping
Gene
ENSRNOG00000004062 | C4bpa
Description
complement component 4 binding protein, alpha [Source:RGD Symbol;Acc:2235]
Coordinates
chr13:47342079-47346864:-
Coord C1 exon
chr13:47346697-47346864
Coord A exon
chr13:47342844-47342908
Coord C2 exon
chr13:47342079-47342506
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTCGGGCTTTGTCATGCTAGGTT
3' ss Score
7.02
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTGTGATTTTCCGCCTGCCATTGCTCACGGACGTTATACAAAATCTTCTTCATACTACGTCAGAACTCAGGTTACATATGAATGTGAAGAAGGATACAGACTGGTTGGAGAGGCAACCATCTCCTGCTGGTATTCACAATGGACACCAGCAGCTCCACAGTGTAAAG
Seq A exon
GTTCCCAAAGCATCACTTGTTCGGAGAATGGAACCTGGTACCCAAAGGTGCCCAGATGTGAGCAG
Seq C2 exon
GAGGTCCCTAAAGACTGTGAGCACGTGTTTGCAGGCAAGAAGCTCATGCAATGTCTGCCAAATTCAAATGACGTGAAAATGGCCCTGGAGGTCTACAAGCTGACTCTGGAGATTAAACAATTACAGCTCCAGATAGACAAGGCAAAGCACGTTGACCGGGAGTTATGAGCGGGTGTTCTCTCAAGGAGGAAGAAGTACCTCATGGGCTTTCTGACTTCAGTGCCAAGCAGAACGTCTGCATTTTTAGCAACCTTTGTAACTTTGGCACCAATGTTCATGGTAATAAATATCTGCTTAGAATAATTCATTAAAGCATAATGTAAGTTTATGAAATAATTAGTCATCTTGTGACTCAAATTTGCTTTTTGGAATGCAATGTGTACTTTTTTTCAATTAAAATCAATCTTGCTCTTGTAATTCATTTACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004062-'18-18,'18-17,19-18
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=94.7)
A:
PF0008415=Sushi=WD(100=93.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGGAGAGGCAACCATC
R:
TCAGCTTGTAGACCTCCAGGG
Band lengths:
170-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]