BtaEX6067619 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009876 | C4BPA
Description
Bos taurus complement component 4 binding protein, alpha (C4BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_174252]
Coordinates
chr16:4817685-4829487:+
Coord C1 exon
chr16:4817685-4817885
Coord A exon
chr16:4819266-4819457
Coord C2 exon
chr16:4829317-4829487
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTATTTTTTTTTAGAGG
3' ss Score
9.46
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGTTGTCTTGGCTTACCACACATCCCTCATGCCTTGTGGGAAAGATATGACCACCAGACACAAACAGAACAGCAAGTGTATGATATTGGGTTTGTATTGAGCTACAAGTGCCATTTTGGCTATAAGCCAGAGACAGATGGACCTACAACTGTGACTTGTCAGAGCAATTTGGAGTGGAGCCCATACATAGAATGTAAGG
Seq A exon
AGGTATGTTGCCCAGAACCAAACCTGAATAATTATGGAAGCATCACTCTACACAGAAGACCTAGCACTAGTACTCACTGTACCTATATCAGTGGAGATAAGATTTCATATGAATGTCATAGTAAATATATGTTTGATGCTTTATGTACAAAACATGGCACTTGGAGTCCTAGAACACCAGAATGCAGACCAG
Seq C2 exon
ATTGTAAATCCCCTCCTGTCATTGCCCATGGACAACATAAAGTAGTCTCTAAATTCTTTACATTTGATCACCAAGCTGTATATGAATGTGATAAAGGGTACATCCTGGTTGGAGCAAAAGAACTCTCCTGCACATCTTCAGGCTGGTCACCTGCGGTCCCTCAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009876-'12-23,'12-21,13-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(95.6=95.6)
A:
PF0008415=Sushi=PD(2.9=3.1),PF0008415=Sushi=WD(100=90.8)
C2:
PF0008415=Sushi=WD(100=94.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAGAGACAGATGGACCT
R:
CTTTACACTGAGGGACCGCAG
Band lengths:
247-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]