RnoEX0015711 @ rn6
Exon Skipping
Gene
ENSRNOG00000004062 | C4bpa
Description
complement component 4 binding protein, alpha [Source:RGD Symbol;Acc:2235]
Coordinates
chr13:47342844-47350805:-
Coord C1 exon
chr13:47350617-47350805
Coord A exon
chr13:47346697-47346864
Coord C2 exon
chr13:47342844-47343019
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTTCATTATCAAGGTT
3' ss Score
7.55
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGATATGCTGTCCAGTACCAGACCCAAAGAGTGTTAGAGTCATTCAACATGAAAAGGCACATCCTGACAACGACTGTACTTACTTCTTTGGTGACGAAGTGTCATACACATGTCAAAATGATATAATGCTTACAGCTACTTGCAAGTCAGATGGCACCTGGCATCCCCGGACACCATCATGTCATCAGA
Seq A exon
GTTGTGATTTTCCGCCTGCCATTGCTCACGGACGTTATACAAAATCTTCTTCATACTACGTCAGAACTCAGGTTACATATGAATGTGAAGAAGGATACAGACTGGTTGGAGAGGCAACCATCTCCTGCTGGTATTCACAATGGACACCAGCAGCTCCACAGTGTAAAG
Seq C2 exon
CTCTATGTCGGAAACCAGAGATAGGAAATGGAGTACTGTCTACTAATAAAGATCAATATGTCGAAACTGAAAATGTCACCATCCAATGTGACTCGGGCTTTGTCATGCTAGGTTCCCAAAGCATCACTTGTTCGGAGAATGGAACCTGGTACCCAAAGGTGCCCAGATGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004062-'17-16,'17-15,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.6)
A:
PF0008415=Sushi=WD(100=94.7)
C2:
PF0008415=Sushi=WD(100=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCACATCCTGACAACGAC
R:
AACCTAGCATGACAAAGCCCG
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]