MmuEX6027169 @ mm10
Exon Skipping
Gene
ENSMUSG00000042554 | Zp3r
Description
zona pellucida 3 receptor [Source:MGI Symbol;Acc:MGI:104965]
Coordinates
chr1:130576713-130582938:-
Coord C1 exon
chr1:130582849-130582938
Coord A exon
chr1:130577886-130578088
Coord C2 exon
chr1:130576713-130577125
Length
203 bp
Sequences
Splice sites
3' ss Seq
AATTTGATGCCCCTTTGAAGAAG
3' ss Score
2.42
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ACTCAGGCCTGCAAAACCGTCTTGCTCTTTTCACCTTCCCAAACATATCAGAAACCAATGTGACAAACAAAACCTATCTATTTGGTCATG
Seq A exon
AAGAAAACTCAACCGAGCATGCCATGAAAGGTGTGTGTCTCAAACCAATGGTCATAAATGGAAACCTGTCTGTGGAGAGAGTTATCTATGCTGAACTGGAAAATATCACCATTCAATGTGATCCTGGATATACCATAGTTGGTTCACCAAACATCATTTGTTCAAACAGAACGTGGTACCCTGAGGTACCCAGCTGTCAGATG
Seq C2 exon
GAGGTCCTAGAAGACTGCAGAATAGTGAGCAGAGGCGCACAACTCTTGCATTGCCTCTCAAGCCCAGAAGATGTGCACAGGGCCCTGAAGGTGTACAAGCTGTTTCTAGAGATCGAACGATTGGAACATCAGAAAGAGAAGTGGATACAGTTACACAGGAAACCTCAGTCTATGAAAATTAATAGGTCATTTAGACTTTGCAATTAGTGGACAGAGTCTCCACGCAGCAGCTGGCCTGACACACACCACCACTCCTGTTAAAAGGTTTTGGGGCCAGAAGAACTTAGGTTGTGTTTTTTTTTTTTCTGTTTTGTTTTTGAAACTATGTCATTCATTAGTGTCTAGCCATTGTGGTTCAATTTGTCTACTTGGCTGGACTCACTGAAATAGTTAAATATAAACTGTCAAATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042554-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTCTTGCTCTTTTCACCT
R:
CTGCGTGGAGACTCTGTCCA
Band lengths:
302-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types