Special

MmuEX6027169 @ mm9

Exon Skipping

Gene
ENSMUSG00000042554 | Zp3r
Description
zona pellucida 3 receptor [Source:MGI Symbol;Acc:MGI:104965]
Coordinates
chr1:132473290-132479515:-
Coord C1 exon
chr1:132479426-132479515
Coord A exon
chr1:132474463-132474665
Coord C2 exon
chr1:132473290-132473702
Length
203 bp
Sequences
Splice sites
3' ss Seq
AATTTGATGCCCCTTTGAAGAAG
3' ss Score
2.42
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ACTCAGGCCTGCAAAACCGTCTTGCTCTTTTCACCTTCCCAAACATATCAGAAACCAATGTGACAAACAAAACCTATCTATTTGGTCATG
Seq A exon
AAGAAAACTCAACCGAGCATGCCATGAAAGGTGTGTGTCTCAAACCAATGGTCATAAATGGAAACCTGTCTGTGGAGAGAGTTATCTATGCTGAACTGGAAAATATCACCATTCAATGTGATCCTGGATATACCATAGTTGGTTCACCAAACATCATTTGTTCAAACAGAACGTGGTACCCTGAGGTACCCAGCTGTCAGATG
Seq C2 exon
GAGGTCCTAGAAGACTGCAGAATAGTGAGCAGAGGCGCACAACTCTTGCATTGCCTCTCAAGCCCAGAAGATGTGCACAGGGCCCTGAAGGTGTACAAGCTGTTTCTAGAGATCGAACGATTGGAACATCAGAAAGAGAAGTGGATACAGTTACACAGGAAACCTCAGTCTATGAAAATTAATAGGTCATTTAGACTTTGCAATTAGTGGACAGAGTCTCCACGCAGCAGCTGGCCTGACACACACCACCACTCCTGTTAAAAGGTTTTGGGGCCAGAAGAACTTAGGTTGTGTTTTTTTTTTTTCTGTTTTGTTTTTGAAACTATGTCATTCATTAGTGTCTAGCCATTGTGGTTCAATTTGTCTACTTGGCTGGACTCACTGAAATAGTTAAATATAAACTGTCAAATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042554-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF0008415=Sushi=WD(100=79.4)

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000045443





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000114401, ENSMUSP00000118784
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:207182513-207182723 
HsaEX1032315
(RP11-164O23.7)
Human
(hg19)
chr1:207355858-207356068 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:4918022-4918228 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
chr2R:9229094-9229276 
HIGH PSI
DmeEX0008170
(hig)
Fruitfly
(dm6)
chr2R:9228582-9228787 




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACCGTCTTGCTCTTTTCACCT

				
R: 
CTGCGTGGAGACTCTGTCCA

				
Band lengths: 
302-505

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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