MmuEX0008660 @ mm10
Exon Skipping
Gene
ENSMUSG00000091705 | H2-Q2
Description
histocompatibility 2, Q region locus 2 [Source:MGI Symbol;Acc:MGI:95931]
Coordinates
chr17:35345454-35346762:+
Coord C1 exon
chr17:35345454-35345486
Coord A exon
chr17:35345660-35345708
Coord C2 exon
chr17:35345844-35346762
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTACCCTAGGCA
3' ss Score
10.28
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GTGGAAAAGTAAGAGACTACGCTCAAGATCCAG
Seq A exon
GCAGGGACAGCCCCCAGAGCTCTGATATCTCTCTCCTAGAATTGTAAAG
Seq C2 exon
CATGAAGACAGCTGCCTGGAGTAGACTGAGTGACAGCCAGTGTGTTCAGGTCTCTCCTGTGACATCAAGAGTCTTTAGACATCAGCTTTCTTTAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTGACAAGTTGCACAGACTGAGGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAGAGTATTATATTGAGTCATAGTTCTCATGGCAATTGATTTATTTTGTTTTCGCTTATTCCTTTTCTTATTTACATGTTCCTGGTAGCCTAGGCTAAGATTTTAAGTGAAAGTAATGGGTTAGAAACCATCCCTAGAGATGGGGTCACTAACATGACCTTATCTGGGGAAACCAACTCTTTACTTTTGAAATTATTTACAAAATTATATAATAGTATTATGACAGATAAAAACTTTTCCAACAATAAAATTTCATGTGGCTACATGTGTGTTATTGGAGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091705_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=0.429 C2=NA
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=FE(40.7=100)
A:
PF066236=MHC_I_C=PD(51.9=82.4)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACTACGCTCAAGATCCAG
R:
TGGTGTGGCAGAGAACATGAG
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types