MmuEX0008660 @ mm9
Exon Skipping
Gene
ENSMUSG00000091705 | CR974466.3
Description
histocompatibility 2, Q region locus 2 [Source:MGI Symbol;Acc:MGI:95931]
Coordinates
chr17:35482399-35484579:+
Coord C1 exon
chr17:35482399-35482431
Coord A exon
chr17:35482605-35482653
Coord C2 exon
chr17:35482789-35484579
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTACCCTAGGCA
3' ss Score
10.28
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GTGGAAAAGTAAGAGACTACGCTCAAGATCCAG
Seq A exon
GCAGGGACAGCCCCCAGAGCTCTGATATCTCTCTCCTAGAATTGTAAAG
Seq C2 exon
CATGAAGACAGCTGCCTGGAGTAGACTGAGTGACAGCCAGTGTGTTCAGGTCTCTCCTGTGACATCAAGAGTCTTTAGACATCAGCTTTCTTTAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTGACAAGTTGCACAGACTGAGGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAGAGTATTATATTGAGTCATAGTTCTCATGGCAATTGATTTATTTTGTTTTCGCTTATTCCTTTTCTTATTTACATGTTCCTGGTAGCCTAGGCTAAGATTTTAAGTGAAAGTAATGGGTTAGAAACCATCCCTAGAGATGGGGTCACTAACATGACCTTATCTGGGGAAACCAACTCTTTACTTTTGAAATTATTTACAAAATTATATAATAGTATTATGACAGATAAAAACTTTTCCAACAATAAAATTTCATGTGGCTACATGTGTGTTATTGGAGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091705_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.400 C2=NA
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=FE(40.7=100)
A:
PF066236=MHC_I_C=PD(51.9=82.4)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACTACGCTCAAGATCCAG
R:
TGGTGTGGCAGAGAACATGAG
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: