MmuEX0010135 @ mm10
Exon Skipping
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124304656-124309267:+
Coord C1 exon
chr6:124304656-124304785
Coord A exon
chr6:124307001-124307321
Coord C2 exon
chr6:124308944-124309267
Length
321 bp
Sequences
Splice sites
3' ss Seq
GTGTTGACTTGTTAATGCAGGAG
3' ss Score
5.6
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGTCATCCACTTTCTACAGAGAACACGTCTATGAAATAGTATCAGGAGACACACGGAGCCATCAAAATCATCAAGCTTTGGAATGGGTGGACACAGAATGGTTCTTCTTGGAGGTGCTGGATCTCCTG
Seq A exon
GAGAAATGAAGAAGGAACTGAGACTGGCGGGTGGTGAAAACAACTGTAGTGGGAGAGTGGAACTTAAGATCCATGACAAGTGGGGCACAGTGTGCAGTAACGGCTGGAGCATGAATGAAGTGTCCGTGGTTTGCCAGCAGCTGGGATGCCCAACTTCTATTAAAGCCCTTGGATGGGCTAACTCCAGCGCCGGCTCTGGATATATCTGGATGGACAAAGTTTCTTGTACAGGGAATGAGTCAGCTCTTTGGGACTGCAAACATGATGGGTGGGGAAAGCATAACTGTACCCATGAAAAAGATGCTGGAGTGACCTGCTCAG
Seq C2 exon
ATGGATCTAATTTGGAGATGAGACTGGTGAACAGTGCGGGCCACCGATGCTTAGGAAGAGTAGAAATAAAGTTCCAGGGAAAGTGGGGGACGGTGTGTGACGACAACTTCAGCAAAGATCACGCTTCTGTGATTTGTAAACAGCTTGGATGTGGAAGTGCCATTAGTTTCTCTGGCTCAGCTAAATTGGGAGCTGGTTCTGGACCAATCTGGCTCGATGACCTGGCATGCAATGGAAATGAGTCAGCTCTCTGGGACTGCAAACACCGGGGATGGGGCAAGCATAACTGTGACCATGCTGAGGATGTCGGTGTGATTTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=90.7)
C2:
PF0053013=SRCR=WD(100=89.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAATGGGTGGACACA
R:
GTCACAGTTATGCTTGCCCCA
Band lengths:
347-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types