RnoEX6015016 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156753247-156756731:+
Coord C1 exon
chr4:156753247-156753330
Coord A exon
chr4:156754461-156754781
Coord C2 exon
chr4:156756408-156756731
Length
321 bp
Sequences
Splice sites
3' ss Seq
ATGTTGACTTGTTGCTGCAGAAG
3' ss Score
6.94
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTATAAAGGATTTGTCCACCTAGGTTTCTTTGTTGTGGCTGTGAGCTCACTTCTCAGCGTCTCTGCTGTCACTCAGGCTCCTG
Seq A exon
AAGGAAGGAAGAAGGAACTGAGACTGGCCGGCGGTGAAAACAACTGTAGTGGGAGAGTGGAGCTCAAGATCCACGAGAAGTGGGGCACAGTGTGCGGTAACGGCTGGAGCATGAACGAGGTGTCCGTGGTTTGCCAGCAGCTAGGATGCCCAACTTTGATTAAAGCCCCGGGATGGGCTAACGCCAGCGCGGGCTCTGGGGACATCTGGATGGACAAGGTTTCTTGCACAGGGAATGAGTCAGCTCTTTGGGACTGCAAACATGAGGGGTGGGGAAAGCACAACTGTACCCATGAACAAGATGCTGGAGTGACCTGCGCAG
Seq C2 exon
ATGGATCTAATTTGGAGATGAGACTGGTGAACAGCGGGGACAACCGATGCTCAGGAAGAGTAGAAATAAAGTTCCAGGGAAAGTGGGGGACAGTGTGTGACGACAACTTCAGCAAAGATCACGCTTCTGTGATTTGTAAACAACTTGGATGTGGAAGTGCCATCAGTTTCTCTGGCTCAGCTAAATTAGGAGCTGGTTCTGGACAAATCTGGCTTGATGATCTGGCATGCAATGGAAATGAGTCAGCTATCTGGGACTGCAAACACCGGGGATGGGGAAGGCACAACTGTGACCATGCTGAGGACGTCGGTGTGATCTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=90.7)
C2:
PF0053013=SRCR=WD(100=89.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGTGAGCTCACTTCTC
R:
ATGGTCACAGTTGTGCCTTCC
Band lengths:
345-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]