MmuEX0010354 @ mm9
Exon Skipping
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25 homolog B (S. pombe) [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131019331-131019913:+
Coord C1 exon
chr2:131019331-131019423
Coord A exon
chr2:131019545-131019774
Coord C2 exon
chr2:131019851-131019913
Length
230 bp
Sequences
Splice sites
3' ss Seq
CCATTCTTGTTCCTATGCAGACT
3' ss Score
9.18
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
AAGGCCCGTGTCTTTCGCTCAAAGTCGCTGTGTCATGAGATTGAGAACATCCTGGATAGTGACCACCGTGGACTGATCGGAGATTACTCTAAG
Seq A exon
ACTCTTCCCTCTGGCTTCCTTTCTGATGCCACCTCAAATCTGTCCAGGCAAAACATTTCCAAATGAATCTCCGGTATGCAGTCTCCTGCCTCAGCCCTGGCTTTCAAACCCAAGAGCAGGAAGCAAGAAAGTCCAGGGCTTTTCCTTCCTCTTTCACCTGCAGAAGGTTCTTTCCCTGGGTATGGGCCCCCAGAGGTTCCACTCAGAGCTGAAGCTGGAGGTCAAAGCAG
Seq C2 exon
GCCTTCCTCCTGCAGACCGTGGATGGCAAACACCAAGACCTTAAGTACATCTCACCAGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330-'17-16,'17-14,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(5.9=51.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCCGTGTCTTTCGCT
R:
AGTTTCTGGTGAGATGTACTTAAGGT
Band lengths:
156-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types