MmuINT0032742 @ mm9
Intron Retention
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25 homolog B (S. pombe) [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131019331-131019913:+
Coord C1 exon
chr2:131019331-131019423
Coord A exon
chr2:131019424-131019850
Coord C2 exon
chr2:131019851-131019913
Length
427 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCG
5' ss Score
6.91
3' ss Seq
TGACTCATGCTCCCCTTCAGGCC
3' ss Score
8.41
Exon sequences
Seq C1 exon
AAGGCCCGTGTCTTTCGCTCAAAGTCGCTGTGTCATGAGATTGAGAACATCCTGGATAGTGACCACCGTGGACTGATCGGAGATTACTCTAAG
Seq A exon
GTAGCGTTCTAGGACCGCAGGAGGCTTCTGTTTCATCTGCTCTGGACCCCTAGTGCAGGAGCTATCTGTCCCAGAGGTCCCCTCTTCCCTCTTGTATCTTTCCATTCTTGTTCCTATGCAGACTCTTCCCTCTGGCTTCCTTTCTGATGCCACCTCAAATCTGTCCAGGCAAAACATTTCCAAATGAATCTCCGGTATGCAGTCTCCTGCCTCAGCCCTGGCTTTCAAACCCAAGAGCAGGAAGCAAGAAAGTCCAGGGCTTTTCCTTCCTCTTTCACCTGCAGAAGGTTCTTTCCCTGGGTATGGGCCCCCAGAGGTTCCACTCAGAGCTGAAGCTGGAGGTCAAAGCAGGTGCTGCCTCTGTCCTTCCAACCTTCGCCCCTCGCCATGTTTCCTTTCCCTGACTCTGACTCATGCTCCCCTTCAG
Seq C2 exon
GCCTTCCTCCTGCAGACCGTGGATGGCAAACACCAAGACCTTAAGTACATCTCACCAGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330-Cdc25b:NM_023117:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(5.9=51.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: