RnoINT0032521 @ rn6
Intron Retention
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123738137-123738723:+
Coord C1 exon
chr3:123738137-123738229
Coord A exon
chr3:123738230-123738660
Coord C2 exon
chr3:123738661-123738723
Length
431 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
TGCCTCATCCCTCCCTTCAGGCC
3' ss Score
10.06
Exon sequences
Seq C1 exon
AAGGCCCGGGTCTTCCGCTCAAAGTCCCTGTGTCACGAGATTGAGAGCATCCTGGACAGTGACCACCGTGGCCTGATTGGAGATTACTCTAAG
Seq A exon
GTAGCATTCTAGGGCTTCAGGAGGCTTCTTTCACCCGCTCTGGAGCCCTAATGCAGGACCCATCTGTCCCCAGAGGTCCCCCCTTCCCTCTGTGTCTTTTCATTCTTGTTCTCATGCAGACTCTTCCCTCTGGGTCCCCTTCCGATGCCACCTCAAATCTGTCCAGGCATCTCATCCTCGAAAAACATTTCCAAATCAATCTCTGGTATGCAATCTCCTGCCTCAGCCTTCGGCTTTCAAACCCAAGAGCAGGAAGCAAGAAGGTCTAGGGCTTTTCCTTCCTCTTTTACCCTCAGAAGGTTGTTCCCTGGGTGCAGGCCCCCAGAGGTTTCACTCAGCTGAATCTGAAGGCTGAGGCCGGTGTTGCCTCTGTCCTTCCAGTCTCTGTGTCTCAATGTGTTTCCCTGACTCTGCCTCATCCCTCCCTTCAG
Seq C2 exon
GCCTTCCTCCTGCAGACTGTGGATGGCAAACACCAAGACCTCAAGTACATCTCACCAGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248:ENSRNOT00000051064:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(6.0=51.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]