HsaINT0031546 @ hg38
Intron Retention
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr20:3802281-3802972:+
Coord C1 exon
chr20:3802281-3802376
Coord A exon
chr20:3802377-3802909
Coord C2 exon
chr20:3802910-3802972
Length
533 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
ATCCCTTCCGTTCCCTTCAGGCC
3' ss Score
11.46
Exon sequences
Seq C1 exon
AAAGCCCGCGTCCTCCGCTCAAAATCACTGTGTCACGATGAGATCGAGAACCTCCTGGACAGTGACCACCGAGAGCTGATTGGAGATTACTCTAAG
Seq A exon
GTACCTGCAGCAGCGAAGGGGGTACCTTGGGGGCTTGACCTCTTACTGACTAGGGGTCCTCTAGCCCAGGGGCTGCTTGGGTTCCTCCCTTTCTCCCCGGAGCCCCCCTTTTCTTTGTCCTTTGTATCTTTTCATCCTTTGTTCTCACATAGACTCCTCCCTCTGGCCCTCCTTGTCTCCTGACTCCACCTCAAGTCAGTCCAGGCATCTGTTGAGTCTCCGTCTTATTTCCAAGCTCATACCTAGCTTGGAACCCCCTCATGCCTCACCTTCGGGCTTGGCAGAGGGTAGGGAGCAGAGTGTGGAGTTCATCTCTTCCACTTCCCTTTTTCATTTCTCTTTCCCCTTGGAAGGTTGTTCCCTGGGTGTCAGACCCAAGAGGTGCCTCTCAGTTGCCATGGGAACCAGAACTGAATTTGAAGGCCAAAGCAGGTGTGGCCTCTGATTTTGGGAATGAAACTTCATTCTTTGAGGCTCCTGGTCTTACCAATTTAACTTTCTCCCCTCTCCCTCATCCCTTCCGTTCCCTTCAG
Seq C2 exon
GCCTTCCTCCTACAGACAGTAGACGGAAAGCACCAAGACCTCAAGTACATCTCACCAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224:ENST00000344256:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(21.5=53.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development