MmuEX0012192 @ mm9
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94803518-94807696:+
Coord C1 exon
chr11:94803518-94803562
Coord A exon
chr11:94803656-94803754
Coord C2 exon
chr11:94807589-94807696
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCCTGACTCCTGCAGGGT
3' ss Score
9.34
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGAAACCCTGGTGCTGATGGACAACCTGGCGCTAAAGGTGCCAAT
Seq A exon
GGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCAGCGGCCCTCCAGGTCCCAAGGGTAACAGT
Seq C2 exon
GGTGATGCTGGTCCCAAAGGTGCTGATGGTTCTCCTGGTAAAGATGGTGCCCGTGGTCTGACTGGTCCCATTGGTCCTCCTGGCCCTGCTGGTGCCCCTGGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506_MULTIEX1-3/19=2-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.1=100)
A:
PF0139113=Collagen=PD(16.1=42.4)
C2:
PF0139113=Collagen=PD(43.1=77.8),PF0139113=Collagen=PU(35.1=55.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCCTGGTGCTGATGGAC
R:
CAGCAGGGCCAGGAGGAC
Band lengths:
135-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: