MmuEX0012199 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4481104-4481948:+
Coord C1 exon
chr6:4481104-4481157
Coord A exon
chr6:4481238-4481345
Coord C2 exon
chr6:4481895-4481948
Length
108 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGTTTCTTCCAACAGGGT
3' ss Score
11.54
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGTGAACGTGGTGAAGTTGGCCCTGCTGGCCCCAATGGATTTGCTGGTCCTGCT
Seq A exon
GGTGCTGCTGGCCAACCCGGTGCTAAAGGAGAGAAGGGAACCAAAGGGCCTAAGGGTGAAAATGGCATTGTTGGTCCAACCGGGTCTGTTGGAGCTGCTGGCCCATCT
Seq C2 exon
GGTCCTAATGGCCCACCTGGTCCTGTTGGAAGTCGTGGTGATGGAGGGCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'42-44,'42-43,43-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.3=100)
A:
PF0139113=Collagen=PD(23.9=58.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACGTGGTGAAGTTGGC
R:
GGGGCCCTCCATCACCAC
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: