GgaEX0028390 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23729602-23735177:+
Coord C1 exon
chr2:23729602-23729655
Coord A exon
chr2:23729757-23729864
Coord C2 exon
chr2:23735070-23735177
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTTCTGCCTATAGGGT
3' ss Score
10.74
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTGAACGTGGTGAGCCTGGTCCTGTAGGTCCTAGTGGATTTGCTGGACCTCCT
Seq A exon
GGTGCAGCTGGTCAGCCTGGTGCTAAAGGCGAGCGTGGCCCTAAGGGACCAAAGGGTGAAACAGGACCAACAGGTGCTATTGGGCCAATTGGTGCTTCTGGACCACCA
Seq C2 exon
GGTGAGCGTGGTGCTCCTGGTAACCCAGGTCCCAGTGGTGCTTTGGGTGCTCCTGGTCCTCATGGCCAAGTTGGTCCTTCTGGAAAGCCTGGAAACCGTGGTGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-28/39=27-35
Average complexity
C2
Mappability confidence:
91%=100=87%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.5=100),PF0139113=Collagen=PU(9.1=44.4)
A:
PF0139113=Collagen=PD(23.0=55.6),PF0139113=Collagen=FE(39.8=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACGTGGTGAGCCTG
R:
AGGATCACCACGGTTTCCAGG
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]