GgaEX0028390 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23558524-23563890:+
Coord C1 exon
chr2:23558524-23558577
Coord A exon
chr2:23558679-23558786
Coord C2 exon
chr2:23563837-23563890
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTTCTGCCTATAGGGT
3' ss Score
10.74
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTGAACGTGGTGAGCCTGGTCCTGTAGGTCCTAGTGGATTTGCTGGACCTCCT
Seq A exon
GGTGCAGCTGGTCAGCCTGGTGCTAAAGGCGAGCGTGGCCCTAAGGGACCAAAGGGTGAAACAGGACCAACAGGTGCTATTGGGCCAATTGGTGCTTCTGGACCACCA
Seq C2 exon
GGCAATCCTGGAAATGATGGTCCTCCAGGCCGTGATGGTGCTCCTGGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX1-36/48=35-42
Average complexity
C2*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.5=100),PF0139113=Collagen=PU(9.1=44.4)
A:
PF0139113=Collagen=PD(23.0=55.6),PF0139113=Collagen=FE(39.8=100)
C2:
PF0139113=Collagen=PD(5.6=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGTGGTGAGCCTGG
R:
CAGGAGCACCATCACGGC
Band lengths:
99-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]