GgaEX0028388 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23555685-23563890:+
Coord C1 exon
chr2:23555685-23555792
Coord A exon
chr2:23557198-23557251
Coord C2 exon
chr2:23563837-23563890
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTGTATGTATTTTAGGGT
3' ss Score
11.62
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
GGTGAGCCTGGTAATGTCGGTCCTGCTGGTGCTCCTGGTCCCGCTGGGCCTGGTGGAATCCCAGGAGAGAGAGGTGTTGCAGGTGTTCCAGGAGGCAAGGGTGAGAAG
Seq A exon
GGTGCCCCAGGTCTGAGAGGTGACACTGGTGCAACAGGAAGAGATGGTGCCCGT
Seq C2 exon
GGCAATCCTGGAAATGATGGTCCTCCAGGCCGTGATGGTGCTCCTGGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX1-32/48=31-42
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(42.6=80.6)
A:
PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=PU(12.6=61.1)
C2:
PF0139113=Collagen=PD(5.6=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTAATGTCGGTCCTGCTG
R:
GGCCTGGAGGACCATCATTTC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]