GgaEX0028386 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23553656-23563890:+
Coord C1 exon
chr2:23553656-23553700
Coord A exon
chr2:23554894-23554992
Coord C2 exon
chr2:23563837-23563890
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATCAGACTGTCTCTCACAGGGC
3' ss Score
6.27
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTCTCCATGGTGAATTTGGTGTCCCTGGTCCTGCTGGCCCAAGG
Seq A exon
GGCGAGCGTGGTCTTCCTGGTGAAAGCGGTGCTGTTGGTCCTGCTGGTCCTATTGGAAGCCGTGGTCCATCTGGCCCACCAGGCCCTGATGGTAACAAG
Seq C2 exon
GGCAATCCTGGAAATGATGGTCCTCCAGGCCGTGATGGTGCTCCTGGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX1-30/48=29-42
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.2=100),PF0139113=Collagen=PU(22.6=93.3)
A:
PF0139113=Collagen=PD(17.4=48.5),PF0139113=Collagen=FE(51.6=100)
C2:
PF0139113=Collagen=PD(5.6=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTGAATTTGGTGTCCCT
R:
GCCAGGAGCACCATCACG
Band lengths:
88-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]