MmuEX6002787 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4525882-4528413:+
Coord C1 exon
chr6:4525882-4525926
Coord A exon
chr6:4527055-4527153
Coord C2 exon
chr6:4528306-4528413
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTAATTGCTGCCTTATAGGGA
3' ss Score
7.46
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGTCTTCCTGGTGAATTCGGTCTCCCTGGTCCTGCTGGTCCAAGA
Seq A exon
GGAGAACGTGGTACCCCGGGTGAGAGTGGAGCTGCTGGCCCTTCTGGTCCTATTGGAAGCCGAGGTCCCAGTGGAGCCCCAGGGCCTGATGGAAACAAG
Seq C2 exon
GGTGAAGCTGGTGCAGTCGGTGCTCCAGGCAGTGCTGGTGCCTCTGGGCCTGGTGGGCTTCCAGGAGAGAGGGGTGCTGCTGGCATACCTGGGGGCAAAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'49-48,'49-47,50-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.1=40.0),PF0139113=Collagen=FE(16.7=100)
A:
PF0139113=Collagen=FE(38.1=100)
C2:
PF0139113=Collagen=PD(19.0=44.4),PF0139113=Collagen=PU(44.6=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCCTGGTGAATTCGGT
R:
TTTCTCCTTTGCCCCCAGGTA
Band lengths:
151-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types