MmuEX0012245 @ mm9
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130142231-130179394:+
Coord C1 exon
chr3:130142231-130142257
Coord A exon
chr3:130177726-130177785
Coord C2 exon
chr3:130179287-130179394
Length
60 bp
Sequences
Splice sites
3' ss Seq
GCGTTGTGTCTCATCCATAGGGC
3' ss Score
10.74
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGAGAACAAGGTGATCAGGGACCTCGG
Seq A exon
GGCCTGCCAGGCTTCCCCACAGTTGCTGCCCTCCACAGCAATCAGATCCTCACTGTCAAG
Seq C2 exon
GGTGACCAAGGACAGGCAGGGCCTCCAGGACCTCCAGGCCCTCCTGGTCCAAGAGGCCCACCTGGGGACACAGGAAAGGACGGCCCCCGAGGAATGCCAGGAGTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897-'7-8,'7-6,9-8
Average complexity
ME(6_9-7_10[100=91])
Mappability confidence:
90%=80=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=PU(1.0=4.2)
A:
PF0139113=Collagen=PD(16.1=45.0),PF0139113=Collagen=PU(1.6=5.0)
C2:
PF0139113=Collagen=FE(67.9=100),PF0139113=Collagen=PU(35.1=54.1)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAAGGTGATCAGGGACCT
R:
AGGTACTCCTGGCATTCCTCG
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: