MmuEX0012268 @ mm10
Exon Skipping
Gene
ENSMUSG00000022483 | Col2a1
Description
collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
Coordinates
chr15:97999275-98000606:-
Coord C1 exon
chr15:98000400-98000606
Coord A exon
chr15:97999651-97999666
Coord C2 exon
chr15:97999275-97999291
Length
16 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTGCTTACGTCAAGGAG
3' ss Score
3.72
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
AGGAGGCTGGCAGCTGTCTGCAGAATGGGCAGAGGTATAAAGATAAGGATGTATGGAAGCCCTCATCTTGCCGCATCTGTGTGTGTGACACTGGGAATGTCCTCTGCGATGACATTATCTGTGAAGACCCAGACTGCCTCAACCCCGAGATCCCCTTCGGAGAGTGCTGTCCCATCTGCCCAGCTGACCTCGCCACTGCCAGTGGTC
Seq A exon
GAGACTCCACGCTAAT
Seq C2 exon
GAAAATTAGGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022483-'5-5,'5-3,7-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.680
Domain overlap (PFAM):
C1:
PF148281=Amnionless=FE(90.8=100),PF0009313=VWC=WD(100=78.6)
A:
PF148281=Amnionless=FE(5.7=100)
C2:
PF148281=Amnionless=PD(5.3=66.7)
Main Inclusion Isoform:
ENSMUST00000131560fB1097
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types