MmuEX0012268 @ mm9
Exon Skipping
Gene
ENSMUSG00000022483 | Col2a1
Description
collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
Coordinates
chr15:97829706-97831037:-
Coord C1 exon
chr15:97830834-97831037
Coord A exon
chr15:97830082-97830097
Coord C2 exon
chr15:97829706-97829722
Length
16 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTGCTTACGTCAAGGAG
3' ss Score
3.72
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
AGGAGGCTGGCAGCTGTCTGCAGAATGGGCAGAGGTATAAAGATAAGGATGTATGGAAGCCCTCATCTTGCCGCATCTGTGTGTGTGACACTGGGAATGTCCTCTGCGATGACATTATCTGTGAAGACCCAGACTGCCTCAACCCCGAGATCCCCTTCGGAGAGTGCTGTCCCATCTGCCCAGCTGACCTCGCCACTGCCAGTG
Seq A exon
GAGACTCCACGCTAAT
Seq C2 exon
GAAAATTAGGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022483-'2-5,'2-3,5-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.767
Domain overlap (PFAM):
C1:
PF148281=Amnionless=FE(90.7=100),PF0009313=VWC=WD(100=79.7),PF0139113=Collagen=PU(3.4=2.9)
A:
PF148281=Amnionless=FE(5.8=100)
C2:
PF148281=Amnionless=PD(2.7=33.3),PF0139113=Collagen=FE(11.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types