MmuEX0012334 @ mm9
Exon Skipping
Gene
ENSMUSG00000048126 | Col6a3
Description
collagen, type VI, alpha 3 [Source:MGI Symbol;Acc:MGI:88461]
Coordinates
chr1:92712528-92726835:-
Coord C1 exon
chr1:92726720-92726835
Coord A exon
chr1:92724437-92725054
Coord C2 exon
chr1:92712528-92713112
Length
618 bp
Sequences
Splice sites
3' ss Seq
ACCAATGTCTTTTTTTAAAGATG
3' ss Score
7.5
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTTCACACTTGGTGCTTAGACATTCAAAATGAGGAAACACCGGCATCTGCCCCTAGTGGCTGTCTTTAGCCTTCTCCTCTCAGGCATTGCCACGACTCATGCCCAACAGCATGGAG
Seq A exon
ATGTCAAAAACGGTGCGGCGGCTGACATAGTGTTTCTAGTGGATTCCTCTTGGAGTGCTGGGAAGGACCGTTTCCTGCTTGTTCAAGAGTTTCTGTCTGATGTTGTAGAGTCTTTAGCTGTGGGAGACAATGATTTTCACTTTGCTCTGGTCCGGCTCAACGGAAACCCACATACCGAGTTCCTGTTAAATACATACCACTCTAAACAAGAAGTCCTTTCTCATATTGTGAACATGTCTTACATTGGGGGAAGCAACCAAACTGGAAAAGGATTAGAATACGTAATTCACAGCCACCTCACTGAGGCTTCCGGAAGCCGGGCTGCTGACGGAGTCCCTCAGGTTATCATAGTATTAACTGATGGACAATCGGAGGATGGCTTCGCTCTGCCCTCAGCGGAACTTAAGTCTGCGGACGTTAATGTGTTTGCAGTCGGAGTTGAGGGTGCAGATGAAAGAGCCCTAGGAGAAGTAGCAAGCGAACCACTCAGTATGCATGTTTTCAACCTAGAGAACGTTACCTCACTGCATGGCCTAGTAGGGAACTTAGTGTCCTGTATACACTCCTCTGTGAATCCAGAAAGGGCTGGGGACAAGGAAAGCCTTAAAGACATCACAG
Seq C2 exon
TCATGGAAGTCAACAAGAGGGACATAGTCTTCCTGGTGGATGGTTCCTCCAGCCTGGGGCCATCCAACTTCAATGCCATCCGAGACTTCGTTACCAGAGTCATCCAGAGGTTGGAAATTGGACAGGACCTGGTTCAGGTATCAGTGGCTCAGTATGCAGACACTGTCAAGCCTGAGTTCTATTTAAATTCCTATACCAACAAAAGGGATGCCATAACTGCTGTACGGAAGATGAGGGCCCTGAATGGCTCAGCCCTGTACACGGGATCTTCTCTGGACTTTGTTCGAAACAACCTCTTCACTAGCTCAGCCGGCCATAGGGCCGCTGAGGGGGTTCCTAAGCTCCTGGTGCTGATCACAGGCGGTAAGTCCCTCGATGAAGTCAGCCAGCCTGCCCAGGAGCTGAAGAGAGGCAGCATCATGGCCTTGGCCGTTGGCAGCAAGGCCGCCGATGAGGATGAGCTGAAAGAGATCGCTTTCGACTCCTCCCTGGTCTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048126_MULTIEX1-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=WD(100=85.5)
C2:
PF0009223=VWA=WD(100=87.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCTAGTGGCTGTCTTTA
R:
AGTCCAGAGAAGATCCCGTGT
Band lengths:
348-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: