GgaEX0005248 @ galGal4
Exon Skipping
Gene
ENSGALG00000003923 | COL6A3
Description
collagen alpha-3(VI) chain precursor [Source:RefSeq peptide;Acc:NP_990865]
Coordinates
chr7:4758719-4769068:+
Coord C1 exon
chr7:4758719-4758868
Coord A exon
chr7:4759344-4759961
Coord C2 exon
chr7:4768466-4769068
Length
618 bp
Sequences
Splice sites
3' ss Seq
CCCCATCTGTTTTTTTAAAGCTG
3' ss Score
8.78
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTCTCACATCAGGTTCTTTGAAACAAGGAGAACAAAAAGGGAAACTGAAACAAAAGAACACAATGAGGAAGCATCGGCATTTGCCCCTTGCGGCAATACTTGGCCTCCTGCTCTCAGGCTTTTGCTCAGTGGGTGCCCAGCAGCAAGCAG
Seq A exon
CTGTCAGAAACGTTGCCGTGGCTGATATAATATTTCTAGTGGATTCCTCTTGGAGCATTGGGAAGGAGCACTTCCAACTCGTTCGAGAGTTTCTGTATGATGTTGTAAAGGCTTTAGATGTGGGAGGAAATGATTTCCGTTTTGCACTGGTCCAGTTCAGCGGAAACCCACACACAGAGTTCCAGTTAAATACGTACCCCTCTAACCAAGATGTGCTCTCCCATATCGCGAATATGCCTTACATGGGGGGAGGCAGCAAGACTGGAAAAGGATTAGAGTACCTAATCGAGAACCATCTCACTAAAGCTGCTGGAAGCAGAGCGAGTGAAGGCGTCCCCCAGGTTATTATAGTGTTAACGGACGGACAATCCCAGGATGATGTGGCTCTGCCATCATCTGTCCTTAAATCGGCCCATGTAAACATGATTGCGGTCGGCGTGCAGGATGCGGTGGAAGGGGAGTTAAAGGAGATAGCGAGCCGACCCTTCGATACCCACCTTTTCAACCTAGAGAATTTTACCGCTCTCCATGGCATAGTTGGAGACTTAGTGGCAAGTGTCCGTACCTCCATGACTCCAGAACAGGCTGGAGCCAAAGGACTGGTTAAAGACATCACAG
Seq C2 exon
TTATTGAAGTGAACAAGAAGGATATAGTCTTCCTGATAGATGGCTCAACAGCTCTGGGGACTGGCCCCTTTAACTCAATTCGTGATTTCGTTGCCAAAATCGTCCAAAGGCTGGAGGTTGGACCTGACCTGATCCAAGTTGCGGTGGCTCAGTATGCAGACACTGTGAGGCCAGAGTTTTATTTTAACACCCATCAGAACAGAAAGGATGTGATGGCTAATGTGAAGAAAATGAAGCTCATGGGCGGTACGGCCCTCAACACTGGCTCGGCACTGGACTTTGTGAGGAACAACTTCTTCACCAGTGCTGCCGGGTGTAGGATGGAGGAAGGGGTGCTCCCCATGCTGGTACTCATCACTGGTGGTAAGTCCATGGATGCCGTTGAGCAAGCTGCAGCAGAGATGAAAAGGAACAGGATAGTGATCCTTGCTGTTGGGTCGAGAAATGCTGACGTGGCAGAACTCCAAGAAATTGCTCATGAGAGAGATTTTGTGTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003923_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=WD(100=85.5)
C2:
PF0009223=VWA=WD(100=85.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAGGCTTTTGCTCAGT
R:
GGCAGCACTGGTGAAGAAGTT
Band lengths:
352-970
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]