BtaEX0009730 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030190 | COL6A3
Description
collagen, type VI, alpha 3 [Source:HGNC Symbol;Acc:HGNC:2213]
Coordinates
chr3:117470134-117482330:-
Coord C1 exon
chr3:117482243-117482330
Coord A exon
chr3:117480227-117480844
Coord C2 exon
chr3:117470134-117470718
Length
618 bp
Sequences
Splice sites
3' ss Seq
ACCAATGTCTTCTTTTAAAGATG
3' ss Score
8.25
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATGAGGAAGCATCGGCATTTGCCCTTAGTGGCCATTCTTTGCCTCTTTTTCTCAGGCTTCTCCTTTACTCGTGGTCAACAACAGCCAG
Seq A exon
ATGTCAAAAATGGTGCCGCTGCCGATATAATATTTCTAGTGGATTCCTCTTGGAGCATTGGCAAGGAACATTTCCAACTTGTTCGAGAGTTTCTATATGATGTTATAGAATCTTTAGCAGTGGGAGACAATGATTTCCGTTTTGCTCTGGTCCAGTTCAACGGCAACCCACATACCGAGTTCCTGTTCAATACGTATCGTTCTAAACAAGAAGTCCTCTCCCATGTTTCCAACATGTCTTATATTGGGGGCAGCAATCAGACTGGAAAAGGATTAGCATACGTAATGCAGAACCACCTCACTGAGGCTGCCGGAAGCCGGGCCAGTGACGGAGTCCCTCAGGTTATCGTAGTGTTAACCCATGGACACTCGGAGGACGGCCTTGCTCTGCCCTCAGCGGAACTTAAGTCTGCTGATGTTAACGTGTTTGCAATTGGAGTTGAGGATGCAGATGAAGCAGCCTTAAAAGAAATAGCAAGTGAACCGCTCAATATGCATGTTTTCAACCTAGAGAATTATACCTCACTTCATGACATAGTAGGAAACTTAGTGGCCTGTGTGCGTTCATCCATGGCTCCAGAAAGGGCTGGAGGCACAGAGATCCCCAAAGACATCACAG
Seq C2 exon
TCATTGAAGTCAACAAGAGGGACATAGTTTTCCTGGTGGATGGCTCTTCCAAACTGGGACTGACCAACTTCAATGCAATCCGCGACTTCATTGCCAAGGTCATCCAGAGGCTGGAGATCAGACAGGATCTTATCCAGGTGGCAGTGGCTCAGTATGCAGACACAGTGAGGCCAGAGTTTTATTTCAATACCTACCCCAGCAAGAGGGAGGTCATAAACGCCGTGCGGAAAATGAAGGCTTTGGATGGCTCAGCCTTGTACACGGGCTCCGCTCTGGATTTTGTTCGGAACAACCTGTTCACGGAGGCGGCCGGCTACCGGGCTGCCGAGGGGGTCCCTAAGCTTCTGGTGCTGGTTACAGGCGGTAAGTCCCTAGATGCGGTCAGCCAGCCCGCCCAGGAGCTGAAGAGGAGCGGCATCCTGGCCTTCGCCGTCGGGAACAAGGTGGCTGACCAGGCTGAACTGGAAGAGATCGCTTTCGATTCCTCCCTGGTGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030190_MULTIEX1-1/4=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=WD(100=84.5)
C2:
PF0009223=VWA=WD(100=86.2)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCCATTCTTTGCCTCTT
R:
TCCGAACAAAATCCAGAGCGG
Band lengths:
350-968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development