MmuEX0012341 @ mm9
Exon Skipping
Gene
ENSMUSG00000091345 | AC119951.1
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105791218-105794493:-
Coord C1 exon
chr9:105794457-105794493
Coord A exon
chr9:105792696-105792707
Coord C2 exon
chr9:105791218-105791705
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTCTCTCCCCAGCCT
3' ss Score
10.99
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCTGTGAACTGATCCAGTTCCTGAGGGACCACAGCC
Seq A exon
CCTGTTGGAAAG
Seq C2 exon
ACAAGTGCCCTGTGTATCCAACAGAGCTGGTCTTTGCTCTGGACCAGTCCTCTGGTATCACAGAAAGGAGATTTAATGAAACAAGGGACACCATCACTTCAATTGTCAGTGACCTCAACATCAGGGAGAACAACTGTCCCGTGGGAGCACGGGTTGCCGTGGTCTCCTATGACTCAGACACCAGCTATCTCATCCGTGGCTCTGACTACCATAACAAGAAGCATCTCCTACAGCTTCTTTCCCAGATAAAATACCAAGTGCCCCGGAAGGCCAGGGACATTGGCAATGCAATGAGGTTTGTGGCCCGCAACGTTTTCAAGCGGATGTCTGCGGGAACCAACACCAGGAGAGTGGCTGTGTTTTTCAGCAATGGCCAGGCAGCCAGTAGAGCATCCATCCTCACGGCCACCATGGAGTTGAGTGCCCTCGATATCAGCCTTGCCGTCTTTGCTTATAACGAAAGAGTGTTCCTTGATGAGGCTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=WD(100=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGTTCCTGAGGGACCA
R:
TCCTTTCTGTGATACCAGAGGACT
Band lengths:
95-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: