MmuEX0012341 @ mm10
Exon Skipping
Gene
ENSMUSG00000091345 | Col6a5
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105888888-105892163:-
Coord C1 exon
chr9:105892123-105892163
Coord A exon
chr9:105890366-105890377
Coord C2 exon
chr9:105888888-105889383
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTCTCTCCCCAGCCT
3' ss Score
10.99
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCTGTGAACTGATCCAGTTCCTGAGGGACCACAGCCGTGA
Seq A exon
CCTGTTGGAAAG
Seq C2 exon
TTTCACAGACAAGTGCCCTGTGTATCCAACAGAGCTGGTCTTTGCTCTGGACCAGTCCTCTGGTATCACAGAAAGGAGATTTAATGAAACAAGGGACACCATCACTTCAATTGTCAGTGACCTCAACATCAGGGAGAACAACTGTCCCGTGGGAGCACGGGTTGCCGTGGTCTCCTATGACTCAGACACCAGCTATCTCATCCGTGGCTCTGACTACCATAACAAGAAGCATCTCCTACAGCTTCTTTCCCAGATAAAATACCAAGTGCCCCGGAAGGCCAGGGACATTGGCAATGCAATGAGGTTTGTGGCCCGCAACGTTTTCAAGCGGATGTCTGCGGGAACCAACACCAGGAGAGTGGCTGTGTTTTTCAGCAATGGCCAGGCAGCCAGTAGAGCATCCATCCTCACGGCCACCATGGAGTTGAGTGCCCTCGATATCAGCCTTGCCGTCTTTGCTTATAACGAAAGAGTGTTCCTTGATGAGGCTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=WD(100=92.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGTTCCTGAGGGACCA
R:
TCCTTTCTGTGATACCAGAGGACT
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types