RnoEX0023496 @ rn6
Exon Skipping
Gene
ENSRNOG00000010663 | Col6a5
Description
collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]
Coordinates
chr8:114559317-114562674:-
Coord C1 exon
chr8:114562638-114562674
Coord A exon
chr8:114560271-114560282
Coord C2 exon
chr8:114559317-114559666
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTNNNTCTCTCTCTCTTTAGCTT
3' ss Score
0
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCTGTGAACTGATCCAGTTCCTGAGGAACAATAGTC
Seq A exon
CTTGTTGGAAAG
Seq C2 exon
AAAAGTGTCCCGTGTACCCAACAGAGCTGGTATTTGCCTTGGACCAGTCCTTTGGTACTTCAGAGAGGAGATTTAATGAGACAAGGGACACCATTGCGTCAATTATCGATGACCTCAACATCAGGGAAAACAACTGTCCCGTGGGAGCACGGGTTGTCGTGGTTTCCTATGACTCAGACATCAGCTACCTCATCCGTGGGTCTGACTACCATAGCAAGAAGCATCTCCTTCAGCTTCTTTCCCAGATAAAATACCAAGTCCCCCAGAAGATCAGGGACATTGGCAGTGCAATGAGGTTTGTGGCCCGCAATGTTTCAAGCGGACATCTCTGGAACAACACCAGGAGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010663-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(73.5=90.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATCCAGTTCCTGAGGAA
R:
TCCTCTCTGAAGTACCAAAGGACT
Band lengths:
98-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]