MmuEX0012634 @ mm9
Exon Skipping
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130220473-130221459:-
Coord C1 exon
chr2:130221372-130221459
Coord A exon
chr2:130220658-130220808
Coord C2 exon
chr2:130220473-130220561
Length
151 bp
Sequences
Splice sites
3' ss Seq
AAGGCATTCCATATCTCCAGGTA
3' ss Score
6.2
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTATGACTGGGTCACATCATTCAAGGTCCAGTTCAGCAATGACAGCCAGACCTGGTGGAAGAGTAGGAACAGTACTGGAATGGACATA
Seq A exon
GTATTTCCTGCCAATTCAGACGCAGAGACCCCAGTGTTGAACCTTCTGCCAGAGCCTCAGGTGGCTCGATTCATTCGCCTGCTGCCTCAGACCTGGTTTCAGGGAGGTGCACCTTGCCTCCGGGCAGAGATCCTGGCCTGCCCAGTCTCAG
Seq C2 exon
ATCCTAATGACCTGTTCCCTGAGGCCCACACACTGGGATCTTCGAACTCTTTGGACTTCCGGCATCACAATTATAAAGCTATGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(20.4=100)
A:
PF0075420=F5_F8_type_C=PD(30.3=84.3)
C2:
PF0024619=Peptidase_M14=PU(0.6=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTGGGTCACATCATTCAAGG
R:
TCATAGCTTTATAATTGTGATGCCGG
Band lengths:
170-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: