RnoEX0024333 @ rn6
Exon Skipping
Gene
ENSRNOG00000021220 | Cpxm1
Description
carboxypeptidase X (M14 family), member 1 [Source:RGD Symbol;Acc:1306937]
Coordinates
chr3:122917882-122918870:-
Coord C1 exon
chr3:122918783-122918870
Coord A exon
chr3:122918066-122918216
Coord C2 exon
chr3:122917882-122917970
Length
151 bp
Sequences
Splice sites
3' ss Seq
AAGGCCTTCCATATCCCCAGGTA
3' ss Score
7.39
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTATGACTGGGTCACATCATTCAAGGTCCAGTTCAGCAATGACAGTCAGAGCTGGTGGATGAGTAGGAACAGTAGTGGGATGGACATG
Seq A exon
GTATTTCCTGCCAATTCAGACGCGGAGACCCCAGTGCTGAACCTTCTGCCAGAGCCTCAGGTGGCTCGATTCATTCGCCTGCTGCCTCAGACCTGGTTCCAGGGAGGTGCGCCTTGCCTCCGGGCAGAGATCCTGGCCTGTCCAGTCTCAG
Seq C2 exon
ATCCTAATGACCTGTTCCCTGAGGCCCATACACTAGGATCATCTGACTCTCTGGACTTCCGGCATCACAATTATAAAGCTATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021220-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(20.4=100)
A:
PF0075420=F5_F8_type_C=PD(30.3=84.3)
C2:
PF0024619=Peptidase_M14=PU(0.6=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTGGGTCACATCATTCAAGG
R:
TCATAGCTTTATAATTGTGATGCCGG
Band lengths:
170-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]