DreEX0024104 @ danRer10
Exon Skipping
Gene
ENSDARG00000098158 | cpxm1b
Description
carboxypeptidase X (M14 family), member 1b [Source:ZFIN;Acc:ZDB-GENE-141212-305]
Coordinates
chr14:51615853-51618908:+
Coord C1 exon
chr14:51615853-51615937
Coord A exon
chr14:51617431-51617581
Coord C2 exon
chr14:51618820-51618908
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCACTGTTGTATGCTAACAGGTG
3' ss Score
7.42
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
CTTGGACTATGTGGAAAGCTTCAAGGTTCAGGTCAGCAATGACACCATCAAATGGAAGCCGTGCATGAACGGGACACAAGAGGCG
Seq A exon
GTGTTTGAGGGAAACACAGACAGTGAAACGCCAGTGCTAGCGCTTCTGCCTGAGCCGGCGGTGGCACAATACATCCGCATTAACCCACAGAGCTGGTTCAAGAATGGCACCATCTGCCTGAGAGCTGAAATTATGGGATGCGAGCTGCCAG
Seq C2 exon
ATCCCAACAATATCTACCCATGGCAATCAGAGGACGGCAGCCAAGACAAGCTGGACTTCAGACATCACAACTACAAAGAGATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098158-'4-7,'4-5,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.133
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(19.9=100)
A:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
C2:
PF0024619=Peptidase_M14=PU(0.6=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTATGTGGAAAGCTTCAAGG
R:
TCCTCATCTCTTTGTAGTTGTGATGT
Band lengths:
170-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]