GgaEX7006611 @ galGal4
Exon Skipping
Gene
ENSGALG00000009693 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr6:31298043-31305497:-
Coord C1 exon
chr6:31305413-31305497
Coord A exon
chr6:31304763-31304913
Coord C2 exon
chr6:31298043-31298131
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCGTGCCTGCACAGATC
3' ss Score
9.27
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGTAACTGGGTGACCTCCTTCAGAGTATTGGTGAGCAATGACAGCCATGCATGGACTGCTGTCAGAAATGAATCTGGAGATGTG
Seq A exon
ATCTTTGAAGGAAACAGTGAGAAGGAGATCCCTGTTCTCAATATGCTGCCTGTGCCACTGGTTGCACGCTACATCCGCATAAACCCTCGGTCCTGGTATGAAGAAGGCAGCATCTGTATGAGGCTGGAAATCTTAGGGTGTCCTTTGCCAG
Seq C2 exon
ACCCAAATAATTATTACCACAGAAGAAATGAGATGACGACTACCGATAATCTCGACTTTAAGCATCATAACTACAAGGAGATGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009693-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(19.9=100)
A:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
C2:
PF0024619=Peptidase_M14=PU(0.6=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCTCCTTCAGAGTATTGG
R:
CTGCCTCATCTCCTTGTAGTT
Band lengths:
165-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]