BtaEX0010025 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018941 | CPXM2
Description
Bos taurus carboxypeptidase X (M14 family), member 2 (CPXM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206057]
Coordinates
chr26:43862196-43871795:-
Coord C1 exon
chr26:43871711-43871795
Coord A exon
chr26:43870567-43870717
Coord C2 exon
chr26:43862196-43862284
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTTGTGCATAAATAGATA
3' ss Score
5.88
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGTGACTGGGTGACCTCCTATAAGGTCATGGTGAGCAATGACAGCCATACGTGGGTCACTGTTAAGAATGGATCTGGAGACATG
Seq A exon
ATATTTGAAGGAAACAGTGAAAAGGAGATCCCTGTACTGAACGAGCTGCCCGTCCCCATGGTGGCACGCTACATCCGCATAAACCCCCAGTCCTGGTTCGATAATGGGAGCATCTGCATGAGGATGGAGATCCTTGGCTGCCCGTTGCCAG
Seq C2 exon
ATCCGAATAACTATTACCACCGACGGAATGAAATGACCACCACCGACGACCTGGATTTTAAGCACCACAACCACAAGGAGATGCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018941_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(19.9=100)
A:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
C2:
PF0024619=Peptidase_M14=PU(0.6=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTATAAGGTCATGGTGAGC
R:
GACGCATCTCCTTGTGGTTGT
Band lengths:
158-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development