RnoEX6005252 @ rn6
Exon Skipping
Gene
ENSRNOG00000015902 | Cpxm2
Description
carboxypeptidase X (M14 family), member 2 [Source:RGD Symbol;Acc:1310955]
Coordinates
chr1:204078113-204086988:-
Coord C1 exon
chr1:204086971-204086988
Coord A exon
chr1:204085669-204085819
Coord C2 exon
chr1:204078113-204078201
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGAGTGTCAATAGATA
3' ss Score
2.11
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATGGATCTGGTGACATG
Seq A exon
ATATTTGAAGGAAACAATGAGAAGGAGACCCCTGTGCTCAATGAGCTGCCAGTCCCCATGGTGGCCCGCTACATTCGCATAAACCCTCAGTCCTGGTTTGATAATGGGAGCATCTGTATGAGGATGGAGATCTTGGGCTGCCCACTGCCAG
Seq C2 exon
ATCCTAATAACTATTATCACCGACGTAATGAGATGACCACCACTGATGACCTGGATTTTAAGCACCACAACTATAAGGAAATGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015902-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.118 C2=0.333
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(9.3=100)
A:
PF0075420=F5_F8_type_C=PD(79.6=84.3)
C2:
PF0024619=Peptidase_M14=PU(0.6=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]